Variant report

Variant	rs12065097
Chromosome Location	chr1:69279222-69279223
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11209352	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11579356	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11801277	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12059133	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12075697	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078685	0.81[ASN][1000 genomes]
rs12082973	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12088265	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12090652	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1492057	0.87[EUR][1000 genomes]
rs1492074	0.85[ASN][1000 genomes]
rs17435073	0.92[ASN][1000 genomes]
rs6656449	0.91[AFR][1000 genomes]
rs6680906	0.81[AFR][1000 genomes]
rs699229	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72680408	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7414744	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854260	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs854270	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs854271	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs854286	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs854287	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9887767	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9887801	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9988609	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527722	chr1:69212053-69323222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69274400-69279800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:69277400-69279600	Enhancers	Brain Germinal Matrix	brain
3	chr1:69277600-69279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:69278000-69279600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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