Variant report

Variant	rs854271
Chromosome Location	chr1:69244573-69244574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11209352	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11579356	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11801277	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059133	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12065097	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12075697	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12082973	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088265	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090652	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1492057	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1826355	0.96[ASN][1000 genomes]
rs2420178	0.96[ASN][1000 genomes]
rs6656449	0.85[AFR][1000 genomes]
rs699229	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680408	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7414744	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854260	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854286	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs854287	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9887767	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9887801	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9988609	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527722	chr1:69212053-69323222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69242800-69244800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:69242800-69245000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:69243000-69245200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:69243200-69245000	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:69243800-69244800	Enhancers	Fetal Lung	lung

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