Variant report

Variant	rs2420178
Chromosome Location	chr1:69171869-69171870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11209352	0.96[ASN][1000 genomes]
rs11801277	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12082973	0.96[ASN][1000 genomes]
rs12088265	0.96[ASN][1000 genomes]
rs12090652	0.92[ASN][1000 genomes]
rs1492057	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1826355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699229	0.96[ASN][1000 genomes]
rs854260	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs854270	0.96[ASN][1000 genomes]
rs854271	0.96[ASN][1000 genomes]
rs854286	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854287	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69169200-69173000	Enhancers	Fetal Heart	heart
2	chr1:69170200-69172000	Enhancers	Rectal Smooth Muscle	rectum
3	chr1:69170400-69172200	Enhancers	Fetal Brain Male	brain
4	chr1:69171400-69172000	Active TSS	Stomach Smooth Muscle	stomach
5	chr1:69171800-69172000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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