Variant report

Variant	rs13376215
Chromosome Location	chr1:172241167-172241168
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489288	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844256	0.87[AMR][1000 genomes]
rs57725120	0.87[AMR][1000 genomes]
rs58338897	0.87[AMR][1000 genomes]
rs60732555	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73030908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73030912	1.00[EUR][1000 genomes]
rs73030915	1.00[EUR][1000 genomes]
rs73030918	1.00[EUR][1000 genomes]
rs73030919	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73030924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043093	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73044900	0.87[AMR][1000 genomes]
rs73046803	0.87[AMR][1000 genomes]
rs73046822	0.87[AMR][1000 genomes]
rs73046977	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73046978	1.00[EUR][1000 genomes]
rs73046981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465650	chr1:172175115-172247127	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv548192	chr1:172175115-172247127	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172225600-172246600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172236200-172247000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:172238600-172241600	Weak transcription	Brain Substantia Nigra	brain
4	chr1:172239000-172243000	Weak transcription	Ovary	ovary
5	chr1:172239000-172243400	Weak transcription	Pancreas	Pancrea
6	chr1:172239000-172262000	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:172239400-172243000	Weak transcription	Hela-S3	cervix
8	chr1:172239400-172244000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:172239800-172243600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:172239800-172246600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:172240000-172242800	Weak transcription	Fetal Heart	heart
12	chr1:172240000-172247600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:172240200-172241400	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:172240200-172241800	Enhancers	NHDF-Ad	bronchial
15	chr1:172240200-172242000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:172240200-172243000	Weak transcription	Brain Anterior Caudate	brain
17	chr1:172240200-172247400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:172240400-172241200	Enhancers	GM12878-XiMat	blood
19	chr1:172240400-172243000	Weak transcription	Fetal Lung	lung
20	chr1:172240400-172243000	Weak transcription	A549	lung
21	chr1:172240400-172246400	Weak transcription	Osteobl	bone
22	chr1:172240600-172242600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:172240600-172243000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:172240800-172241200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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