Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172235115..172238078-chr1:172246483..172247996,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1029319	1.00[CHD][hapmap]
rs12403844	0.94[YRI][hapmap]
rs13376215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844117	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844256	1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs479185	1.00[CEU][hapmap]
rs57725120	0.87[AMR][1000 genomes]
rs58338897	0.87[AMR][1000 genomes]
rs60732555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73030908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73030912	1.00[EUR][1000 genomes]
rs73030915	1.00[EUR][1000 genomes]
rs73030918	1.00[EUR][1000 genomes]
rs73030919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73030924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043093	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73044900	0.87[AMR][1000 genomes]
rs73046803	0.87[AMR][1000 genomes]
rs73046822	0.87[AMR][1000 genomes]
rs73046977	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73046978	1.00[EUR][1000 genomes]
rs73046981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465650	chr1:172175115-172247127	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv548192	chr1:172175115-172247127	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172225600-172246600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172234800-172236600	Enhancers	A549	lung
3	chr1:172235000-172239800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:172235200-172237200	Weak transcription	HepG2	liver
5	chr1:172235200-172238200	Weak transcription	Fetal Lung	lung
6	chr1:172235400-172236200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:172235600-172236200	Enhancers	NH-A	brain
8	chr1:172235600-172236200	Enhancers	Osteobl	bone
9	chr1:172235800-172237800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:172236000-172237200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:172236000-172237200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:172236000-172238800	Weak transcription	Stomach Mucosa	stomach

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