The 2.0 version of rSNPBase

Variant report

Variant rs1029319
Chromosome Location chr1:172371707-172371708
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
2 chr1:172367000-172372800 Enhancers Primary T cells from cord blood blood
3 chr1:172367200-172372000 Enhancers Fetal Lung lung
4 chr1:172368400-172390800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr1:172368600-172374800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr1:172368800-172376800 Weak transcription Fetal Brain Male brain
7 chr1:172369200-172372400 Enhancers Aorta Aorta
8 chr1:172369400-172371800 Enhancers Primary T helper cells PMA-I stimulated --
9 chr1:172369400-172372000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
10 chr1:172369400-172372200 Weak transcription Brain Substantia Nigra brain
11 chr1:172369400-172372400 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr1:172369400-172373200 Weak transcription Fetal Brain Female brain
13 chr1:172369600-172371800 Weak transcription Brain Cingulate Gyrus brain
14 chr1:172369600-172372000 Weak transcription Brain Angular Gyrus brain
15 chr1:172369600-172372200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr1:172369600-172372200 Weak transcription Fetal Intestine Small intestine
17 chr1:172369600-172372400 Weak transcription Brain Hippocampus Middle brain
18 chr1:172369600-172372400 Weak transcription Brain Inferior Temporal Lobe brain
19 chr1:172369600-172377000 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:172369600-172377600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr1:172369800-172372000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr1:172369800-172372200 Weak transcription Primary T cells fromperipheralblood blood
23 chr1:172369800-172372200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:172369800-172375000 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:172369800-172375000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:172370000-172372400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:172370200-172372000 Weak transcription Fetal Muscle Leg muscle
28 chr1:172370200-172372400 Weak transcription NHDF-Ad bronchial
29 chr1:172370200-172373000 Weak transcription Muscle Satellite Cultured Cells --
30 chr1:172370200-172385600 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr1:172370600-172371800 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr1:172370600-172372000 Weak transcription Colon Smooth Muscle Colon
33 chr1:172370600-172378200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr1:172370600-172378200 Weak transcription Fetal Kidney kidney
35 chr1:172370800-172371800 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr1:172370800-172371800 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr1:172370800-172372200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:172371400-172372200 Weak transcription Fetal Stomach stomach
39 chr1:172371600-172372000 Weak transcription Ovary ovary
40 chr1:172371600-172372600 Enhancers Brain Anterior Caudate brain

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Last update: Aug 31, 2015