Variant report

Variant	rs7533968
Chromosome Location	chr1:172375387-172375388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172369690..172372664-chr1:172375281..172378143,4	K562	blood:
2	chr1:172368576..172370246-chr1:172375053..172377189,2	MCF-7	breast:
3	chr1:172374826..172377072-chr1:172379296..172381158,2	K562	blood:
4	chr1:172375080..172377072-chr1:172379194..172380796,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1029319	1.00[ASW][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10489283	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10911692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10911765	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12095658	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844423	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60183720	0.83[AFR][1000 genomes]
rs73046884	0.82[AFR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172352400-172386400	Weak transcription	Psoas Muscle	Psoas
2	chr1:172368400-172390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:172368800-172376800	Weak transcription	Fetal Brain Male	brain
4	chr1:172369600-172377000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:172369600-172377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:172370200-172385600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:172370600-172378200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:172370600-172378200	Weak transcription	Fetal Kidney	kidney
9	chr1:172372800-172381600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:172373000-172378200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:172373000-172378200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:172373000-172390800	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:172373000-172390800	Weak transcription	Brain Substantia Nigra	brain
14	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
15	chr1:172374800-172375400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:172374800-172375600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:172374800-172375600	Enhancers	NHDF-Ad	bronchial
18	chr1:172375000-172375400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:172375000-172375400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr1:172375000-172375400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:172375000-172375600	Enhancers	NHEK	skin

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