Variant report

Variant	rs73046884
Chromosome Location	chr1:172408736-172408737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172408027..172410947-chr1:172419533..172423380,3	MCF-7	breast:
2	chr1:172408347..172411338-chr1:172505750..172507919,2	K562	blood:
3	chr1:172393155..172395518-chr1:172407211..172410436,4	K562	blood:
4	chr1:172407552..172409646-chr1:172501120..172503555,2	MCF-7	breast:
5	chr1:172406592..172408826-chr1:172417525..172419582,2	K562	blood:
6	chr1:172405801..172408745-chr1:172408809..172410312,2	K562	blood:
7	chr1:172407688..172409454-chr1:172424821..172426933,2	K562	blood:
8	chr1:172021401..172023221-chr1:172408357..172410732,2	K562	blood:
9	chr1:172407500..172410294-chr1:172411639..172414192,4	MCF-7	breast:
10	chr1:172396564..172399537-chr1:172408525..172411857,4	K562	blood:
11	chr1:172406341..172410996-chr1:172411275..172416251,7	K562	blood:
12	chr1:172408095..172410221-chr1:172499797..172501629,2	K562	blood:
13	chr1:172407211..172410996-chr1:172411275..172415406,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000180999	Chromatin interaction
ENSG00000094975	Chromatin interaction
ENSG00000135845	Chromatin interaction

rs_ID	r²[population]
rs1029319	0.82[AFR][1000 genomes]
rs10489283	0.80[AFR][1000 genomes]
rs10911765	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095658	0.82[AFR][1000 genomes]
rs16844423	0.84[AFR][1000 genomes]
rs60183720	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533968	0.82[AFR][1000 genomes]

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172385800-172411000	Weak transcription	Fetal Stomach	stomach
3	chr1:172391000-172410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:172391000-172412200	Weak transcription	HSMMtube	muscle
5	chr1:172391400-172409400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:172391800-172411000	Weak transcription	Spleen	Spleen
7	chr1:172392000-172412200	Weak transcription	Right Ventricle	heart
8	chr1:172392200-172411000	Weak transcription	Left Ventricle	heart
9	chr1:172395600-172412200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:172396200-172412000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:172396600-172411000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:172396600-172412400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:172396800-172411600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr1:172396800-172412200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:172397000-172410000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:172397000-172411000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr1:172398800-172411000	Weak transcription	Aorta	Aorta
18	chr1:172399000-172411600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:172399200-172410800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:172400800-172410800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:172401000-172409600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:172401200-172410000	Weak transcription	Thymus	Thymus
23	chr1:172401200-172410400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:172401200-172411000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:172401200-172411000	Weak transcription	Right Atrium	heart
26	chr1:172401200-172412400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:172401400-172409600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:172401400-172409600	Weak transcription	NHEK	skin
29	chr1:172401400-172410000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:172401400-172410600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:172401400-172410800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:172401400-172411000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr1:172401400-172411000	Weak transcription	HMEC	breast
34	chr1:172401400-172411800	Weak transcription	Fetal Intestine Small	intestine
35	chr1:172401400-172412000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:172401400-172412000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr1:172401400-172412200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr1:172401400-172412800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:172401600-172409600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:172401600-172410800	Weak transcription	Lung	lung
41	chr1:172401600-172411000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:172401600-172411000	Weak transcription	Esophagus	oesophagus
43	chr1:172401600-172411000	Weak transcription	Placenta	Placenta
44	chr1:172401600-172411000	Weak transcription	Pancreas	Pancrea
45	chr1:172401600-172411000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr1:172401600-172411200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr1:172401600-172411800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr1:172401600-172412000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr1:172401600-172412200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr1:172402000-172409400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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