Variant report

Variant	rs13380011
Chromosome Location	chr15:82457055-82457056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82456960..82458670-chr15:82467666..82470258,2	MCF-7	breast:
2	chr15:82445490..82448041-chr15:82456546..82458879,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10152239	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152266	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152695	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323987	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439569	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439679	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442609	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442655	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442682	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12442862	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28463928	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715426	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57264750	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57598148	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58227679	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58303451	0.88[AMR][1000 genomes]
rs60341871	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60439528	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61094688	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413136	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61421773	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61433916	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167816	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs74030944	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74030948	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74030949	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972386	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:82420400-82458400	Weak transcription	HepG2	liver
3	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
4	chr15:82432600-82457800	Weak transcription	Fetal Lung	lung
5	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:82433400-82458400	Weak transcription	Fetal Kidney	kidney
8	chr15:82439800-82465600	Weak transcription	K562	blood
9	chr15:82440400-82458200	Weak transcription	HUVEC	blood vessel
10	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
11	chr15:82444400-82465200	Weak transcription	Brain Germinal Matrix	brain
12	chr15:82444600-82458000	Weak transcription	NHLF	lung
13	chr15:82444600-82495800	Weak transcription	Fetal Intestine Small	intestine
14	chr15:82450200-82463400	Weak transcription	Hela-S3	cervix
15	chr15:82451000-82469800	Weak transcription	Psoas Muscle	Psoas
16	chr15:82451400-82458200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:82452200-82463200	Weak transcription	Fetal Heart	heart
18	chr15:82452600-82470600	Weak transcription	Esophagus	oesophagus
19	chr15:82452800-82457600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:82453200-82464000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:82453400-82458200	Weak transcription	NHDF-Ad	bronchial
22	chr15:82453400-82464600	Weak transcription	NHEK	skin
23	chr15:82454200-82457800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:82454400-82458600	Strong transcription	Primary T cells from cord blood	blood
25	chr15:82455200-82458000	Weak transcription	GM12878-XiMat	blood
26	chr15:82455200-82458400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:82455400-82457600	Weak transcription	Brain Angular Gyrus	brain
28	chr15:82455400-82457600	Weak transcription	A549	lung
29	chr15:82455400-82459200	Weak transcription	Colon Smooth Muscle	Colon
30	chr15:82455400-82462600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:82455400-82463400	Weak transcription	Right Ventricle	heart
32	chr15:82455400-82464600	Weak transcription	HMEC	breast
33	chr15:82455400-82466600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:82455400-82466800	Weak transcription	Brain Substantia Nigra	brain
35	chr15:82455400-82475200	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:82455400-82475200	Weak transcription	Pancreas	Pancrea
37	chr15:82455600-82458200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:82455600-82459000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr15:82455600-82459400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr15:82455600-82460000	Weak transcription	Primary B cells from cord blood	blood
41	chr15:82455600-82463400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:82455600-82464600	Weak transcription	Placenta	Placenta
43	chr15:82455600-82469200	Weak transcription	Brain Anterior Caudate	brain
44	chr15:82455600-82475200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:82455800-82464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:82455800-82467200	Weak transcription	Spleen	Spleen
47	chr15:82455800-82469800	Weak transcription	Ovary	ovary
48	chr15:82456000-82458000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:82456000-82458200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:82456000-82458600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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