Variant report

Variant	rs61433916
Chromosome Location	chr15:82502528-82502529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10152239	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10152266	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152695	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323987	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439569	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439679	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442609	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12442655	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442682	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12442862	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380011	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28463928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715426	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57264750	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57598148	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58227679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58303451	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60341871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60439528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61094688	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413136	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61421773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167816	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74030944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74030948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74030949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972386	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1041040	chr15:82465124-82606410	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1801737	chr15:82468455-82589044	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv570246	chr15:82485707-82581264	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv976956	chr15:82491360-82521554	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1041506	chr15:82496164-82581427	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs61433916	FAM154B	cis	Heart Left Ventricle	GTEx
rs61433916	FAM154B	cis	Whole Blood	GTEx
rs61433916	FAM154B	cis	Artery Tibial	GTEx
rs61433916	DKFZp666G057	Cis_1M	lymphoblastoid	RTeQTL
rs61433916	FAM154B	cis	Thyroid	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:82456000-82510000	Weak transcription	Thymus	Thymus
3	chr15:82456400-82502600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:82456400-82502800	Weak transcription	Gastric	stomach
5	chr15:82456400-82505400	Weak transcription	Dnd41	blood
6	chr15:82456400-82505600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:82456400-82505600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:82456800-82509800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:82458200-82504800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:82458800-82502800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:82462000-82505800	Weak transcription	Primary B cells from cord blood	blood
12	chr15:82465000-82510000	Weak transcription	Placenta	Placenta
13	chr15:82471000-82502800	Weak transcription	Fetal Stomach	stomach
14	chr15:82471000-82518600	Weak transcription	Right Ventricle	heart
15	chr15:82474800-82502600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:82474800-82502800	Weak transcription	Fetal Intestine Large	intestine
17	chr15:82475400-82502600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:82476000-82519200	Weak transcription	Pancreas	Pancrea
19	chr15:82476400-82502800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:82477000-82502600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:82477000-82510000	Weak transcription	HMEC	breast
22	chr15:82477000-82519200	Weak transcription	HSMMtube	muscle
23	chr15:82477400-82502600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:82477600-82522800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:82479800-82510200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:82480000-82502800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:82481800-82553000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:82484800-82502600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:82485800-82510000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:82485800-82510400	Weak transcription	Osteobl	bone
31	chr15:82486000-82520400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:82488000-82519200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:82488200-82510200	Weak transcription	Left Ventricle	heart
34	chr15:82488200-82531200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:82488400-82502800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:82488600-82502800	Weak transcription	Esophagus	oesophagus
37	chr15:82488600-82505600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:82489600-82511400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:82490400-82502600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:82490400-82509400	Weak transcription	GM12878-XiMat	blood
41	chr15:82490600-82510000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:82490800-82506400	Weak transcription	HSMM	muscle
43	chr15:82491200-82510000	Weak transcription	Primary T cells from cord blood	blood
44	chr15:82492200-82503800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:82492600-82509800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:82493600-82510000	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:82494400-82510000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:82494800-82518800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:82495600-82510000	Weak transcription	Fetal Lung	lung
50	chr15:82495800-82505600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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