Variant report

Variant	rs13380095
Chromosome Location	chr15:58679832-58679833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58670858..58672854-chr15:58678290..58681276,2	MCF-7	breast:
2	chr15:58675991..58678940-chr15:58679364..58680933,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10468016	1.00[AFR][1000 genomes]
rs34452263	1.00[AFR][1000 genomes]
rs7496309	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58676200-58681200	Weak transcription	HepG2	liver
2	chr15:58676400-58681000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:58678800-58680200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:58679000-58680000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:58679000-58680000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:58679000-58680000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:58679000-58680000	Enhancers	NHLF	lung
8	chr15:58679000-58680200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:58679000-58680200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:58679000-58680200	Enhancers	Osteobl	bone
11	chr15:58679200-58680000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:58679200-58680000	Enhancers	HSMM	muscle
13	chr15:58679200-58680400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:58679400-58680000	Enhancers	HSMMtube	muscle
15	chr15:58679400-58681800	Weak transcription	Fetal Kidney	kidney
16	chr15:58679400-58690600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr15:58679600-58680000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:58679600-58680000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:58679600-58681800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:58679800-58680400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:58679800-58680400	Enhancers	NHDF-Ad	bronchial
22	chr15:58679800-58681200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:58679800-58681400	Weak transcription	HMEC	breast

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