Variant report

Variant	rs13380897
Chromosome Location	chr18:25196184-25196185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60776684	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60913878	0.84[AFR][1000 genomes]
rs73414942	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25194200-25196800	Enhancers	Liver	Liver
2	chr18:25194800-25196200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr18:25195000-25196200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:25195000-25196200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr18:25195000-25196600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr18:25195200-25198600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:25195400-25196600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:25195800-25196800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr18:25195800-25196800	Enhancers	Fetal Intestine Large	intestine
10	chr18:25196000-25196400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr18:25196000-25196800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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