Variant report

Variant	rs60776684
Chromosome Location	chr18:25184580-25184581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13380897	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58172455	0.82[AFR][1000 genomes]
rs60913878	1.00[AFR][1000 genomes]
rs73414942	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25184000-25185400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr18:25184200-25185400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr18:25184200-25185400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr18:25184400-25185000	Enhancers	NH-A	brain
5	chr18:25184400-25185200	Enhancers	Fetal Brain Female	brain
6	chr18:25184400-25185600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:25184400-25185600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr18:25184400-25185600	Enhancers	Fetal Intestine Large	intestine
9	chr18:25184400-25185800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr18:25184400-25186000	Enhancers	Fetal Intestine Small	intestine
11	chr18:25184400-25186000	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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