Variant report

Variant	rs73414942
Chromosome Location	chr18:25187462-25187463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13380897	1.00[EUR][1000 genomes]
rs1420948	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1420952	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16943782	1.00[ASN][1000 genomes]
rs16943789	1.00[ASN][1000 genomes]
rs16943849	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4800283	0.91[AFR][1000 genomes]
rs4800816	1.00[ASN][1000 genomes]
rs56387355	1.00[ASN][1000 genomes]
rs59085826	1.00[ASN][1000 genomes]
rs60776684	1.00[EUR][1000 genomes]
rs73414945	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25185200-25195000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:25185600-25188200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr18:25186000-25188200	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links