Variant report

Variant	rs16943782
Chromosome Location	chr18:25163866-25163867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1420948	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1420952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16943779	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16943789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16943806	1.00[AMR][1000 genomes]
rs16943849	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4800283	1.00[AMR][1000 genomes]
rs4800816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56387355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57518255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59085826	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73412987	1.00[AMR][1000 genomes]
rs73413000	1.00[AMR][1000 genomes]
rs73414903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414911	1.00[AMR][1000 genomes]
rs73414942	1.00[ASN][1000 genomes]
rs73414945	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73944952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25159000-25167400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25162600-25168000	Enhancers	Fetal Intestine Large	intestine
3	chr18:25163200-25164000	Weak transcription	Fetal Intestine Small	intestine
4	chr18:25163400-25164000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr18:25163600-25165600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr18:25163800-25165600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links