Variant report
| Variant | rs73412987 |
|---|---|
| Chromosome Location | chr18:25149851-25149852 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1420948 | 1.00[AMR][1000 genomes] |
| rs1420952 | 1.00[AMR][1000 genomes] |
| rs16943779 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16943782 | 1.00[AMR][1000 genomes] |
| rs16943789 | 1.00[AMR][1000 genomes] |
| rs16943806 | 1.00[AMR][1000 genomes] |
| rs16943849 | 1.00[AMR][1000 genomes] |
| rs4800283 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4800816 | 1.00[AMR][1000 genomes] |
| rs56387355 | 1.00[AMR][1000 genomes] |
| rs57518255 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59085826 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59993739 | 1.00[AFR][1000 genomes] |
| rs61020210 | 1.00[AFR][1000 genomes] |
| rs73396752 | 0.87[AFR][1000 genomes] |
| rs73396756 | 1.00[AFR][1000 genomes] |
| rs73396787 | 1.00[AFR][1000 genomes] |
| rs73413000 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73414903 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73414911 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73414945 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73414946 | 1.00[AFR][1000 genomes] |
| rs73944952 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73944973 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761996 | chr18:24866083-25818618 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv833602 | chr18:24993030-25180823 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:25149800-25150000 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
