Variant report

Variant	rs73414946
Chromosome Location	chr18:25194980-25194981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59085826	1.00[AFR][1000 genomes]
rs59993739	1.00[AFR][1000 genomes]
rs61020210	1.00[AFR][1000 genomes]
rs73396752	0.87[AFR][1000 genomes]
rs73396756	1.00[AFR][1000 genomes]
rs73396787	1.00[AFR][1000 genomes]
rs73412987	1.00[AFR][1000 genomes]
rs73413000	1.00[AFR][1000 genomes]
rs73414911	1.00[AFR][1000 genomes]
rs73414945	1.00[AFR][1000 genomes]
rs73944973	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25185200-25195000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:25194200-25196800	Enhancers	Liver	Liver
3	chr18:25194600-25195600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr18:25194600-25195600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr18:25194800-25195200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr18:25194800-25195400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:25194800-25195600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr18:25194800-25195800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr18:25194800-25195800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr18:25194800-25196200	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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