Variant report

Variant	rs1338536
Chromosome Location	chr6:143929747-143929748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12216096	0.86[CHB][hapmap];0.87[CHD][hapmap]
rs17072813	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17072815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17072817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6899521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484763	1.00[JPT][hapmap]
rs9496663	0.82[CHD][hapmap]
rs9496701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9496702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9496703	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9496704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9496705	0.86[CHB][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:143919800-143930400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143919800-143930600	Weak transcription	Stomach Mucosa	stomach
5	chr6:143920000-143935200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:143920200-143935000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:143920600-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:143928400-143930600	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:143928600-143934400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:143929000-143929800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:143929000-143930000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:143929000-143930400	Active TSS	Stomach Smooth Muscle	stomach
13	chr6:143929200-143929800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:143929200-143929800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:143929200-143929800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:143929200-143929800	Active TSS	Brain Angular Gyrus	brain
17	chr6:143929200-143929800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr6:143929200-143929800	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr6:143929200-143929800	Active TSS	Fetal Brain Female	brain
20	chr6:143929200-143930000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:143929200-143930000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:143929200-143930200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:143929200-143930400	Active TSS	Brain Cingulate Gyrus	brain
24	chr6:143929200-143930400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:143929200-143930600	Active TSS	Placenta	Placenta
26	chr6:143929200-143935400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:143929400-143929800	Active TSS	Brain Hippocampus Middle	brain
28	chr6:143929400-143930400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:143929400-143930400	Active TSS	Right Atrium	heart
30	chr6:143929400-143930800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:143929400-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:143929400-143935000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:143929400-143935200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:143929600-143931400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:143929600-143938600	Weak transcription	Fetal Heart	heart
36	chr6:143929600-143941800	Weak transcription	Esophagus	oesophagus
37	chr6:143929600-143943400	Weak transcription	Left Ventricle	heart

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