Variant report

Variant	rs9484763
Chromosome Location	chr6:143865973-143865974
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143835971..143837808-chr6:143863905..143866347,2	MCF-7	breast:
2	chr6:143858472..143863143-chr6:143863461..143868967,5	K562	blood:
3	chr6:143859418..143861266-chr6:143863799..143866408,2	K562	blood:
4	chr6:143831309..143833677-chr6:143865327..143867194,2	MCF-7	breast:
5	chr6:143862944..143867342-chr6:143867503..143870947,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction

rs_ID	r²[population]
rs1338536	1.00[JPT][hapmap]
rs17072813	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17072815	0.83[ASN][1000 genomes]
rs17072817	0.83[ASN][1000 genomes]
rs6899521	0.83[ASN][1000 genomes]
rs9484757	0.81[AFR][1000 genomes]
rs9484761	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9496657	0.81[AFR][1000 genomes]
rs9496658	0.81[AFR][1000 genomes]
rs9496666	0.91[AFR][1000 genomes]
rs9496668	0.91[AFR][1000 genomes]
rs9496675	1.00[YRI][hapmap]
rs9496702	0.83[ASN][1000 genomes]
rs9496703	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9496704	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9496705	0.81[ASN][1000 genomes]

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143859200-143866200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:143859400-143871200	Weak transcription	Pancreas	Pancrea
3	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:143859400-143876000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:143859600-143866200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:143859600-143868600	Weak transcription	Primary B cells from cord blood	blood
8	chr6:143860400-143866400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:143860800-143866600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:143861000-143866400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:143861000-143866800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:143861000-143866800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:143861400-143866400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:143861400-143866800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:143861600-143866400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:143861600-143866400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:143861600-143866600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:143861600-143866600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:143861800-143870600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:143862200-143866800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:143862800-143867400	Enhancers	Stomach Mucosa	stomach
22	chr6:143863200-143869000	Enhancers	Fetal Intestine Large	intestine
23	chr6:143863200-143870200	Weak transcription	Small Intestine	intestine
24	chr6:143863400-143870200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:143863600-143866200	Enhancers	Fetal Intestine Small	intestine
26	chr6:143863800-143870200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:143864200-143866800	Enhancers	Duodenum Mucosa	Duodenum
28	chr6:143864400-143866400	Weak transcription	HMEC	breast
29	chr6:143864600-143866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:143864600-143867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:143864600-143867200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:143864800-143867800	Weak transcription	Gastric	stomach
33	chr6:143865000-143866800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr6:143865000-143867000	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:143865000-143867400	Enhancers	GM12878-XiMat	blood
36	chr6:143865000-143875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:143865200-143866400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:143865200-143866400	Weak transcription	HepG2	liver
39	chr6:143865400-143877800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr6:143865600-143866200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:143865600-143874600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:143865800-143866600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:143865800-143867000	Enhancers	Primary T cells from cord blood	blood
44	chr6:143865800-143867600	Enhancers	NHEK	skin
45	chr6:143865800-143876000	Weak transcription	Fetal Heart	heart

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