Variant report

Variant	rs17072815
Chromosome Location	chr6:143928788-143928789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143923576..143926302-chr6:143926359..143929305,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12216096	0.86[CHB][hapmap]
rs1338536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17072813	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17072817	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9484763	0.83[ASN][1000 genomes]
rs9496701	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9496702	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496703	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496704	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496705	0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143911200-143929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:143917200-143929000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143918200-143929200	Weak transcription	Lung	lung
6	chr6:143919800-143930400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:143919800-143930600	Weak transcription	Stomach Mucosa	stomach
8	chr6:143920000-143935200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:143920200-143935000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:143920600-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:143923800-143929200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:143923800-143929200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:143926800-143929000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:143926800-143929600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:143927600-143929400	Enhancers	HUVEC	blood vessel
16	chr6:143928000-143929400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:143928200-143928800	Weak transcription	Ovary	ovary
18	chr6:143928200-143929400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:143928200-143929400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:143928200-143929600	Enhancers	Fetal Heart	heart
21	chr6:143928200-143929600	Enhancers	Fetal Lung	lung
22	chr6:143928400-143928800	Enhancers	A549	lung
23	chr6:143928400-143929000	Weak transcription	Placenta	Placenta
24	chr6:143928400-143929200	Enhancers	Right Atrium	heart
25	chr6:143928400-143929400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:143928400-143929600	Enhancers	Aorta	Aorta
27	chr6:143928400-143930600	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr6:143928600-143934400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links