Variant report

Variant	rs9496657
Chromosome Location	chr6:143860373-143860374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143859418..143861266-chr6:143863799..143866408,2	K562	blood:
2	chr6:143770561..143773410-chr6:143856875..143861047,4	MCF-7	breast:
3	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
4	chr6:143858472..143863143-chr6:143863461..143868967,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUCA2-1	chr6:143860213-143860858	NONHSAT115358

Variant related genes	Relation type
ENSG00000223203	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000001036	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs9321905	1.00[AMR][1000 genomes]
rs9484757	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484758	0.90[AFR][1000 genomes]
rs9484761	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484763	0.81[AFR][1000 genomes]
rs9496658	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496666	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496668	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496710	1.00[AMR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143858600-143860400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr6:143858800-143861400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr6:143859000-143860800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr6:143859200-143861600	Enhancers	Stomach Mucosa	stomach
5	chr6:143859200-143863000	Enhancers	Primary T cells from cord blood	blood
6	chr6:143859200-143863000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:143859200-143863800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:143859200-143864000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:143859200-143864000	Weak transcription	NHEK	skin
10	chr6:143859200-143866200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:143859400-143860600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:143859400-143860800	Weak transcription	Fetal Heart	heart
13	chr6:143859400-143862800	Weak transcription	Gastric	stomach
14	chr6:143859400-143863200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:143859400-143863200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:143859400-143863400	Weak transcription	Right Ventricle	heart
17	chr6:143859400-143863800	Weak transcription	NHLF	lung
18	chr6:143859400-143864000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:143859400-143864000	Weak transcription	HMEC	breast
20	chr6:143859400-143864600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:143859400-143864800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:143859400-143871200	Weak transcription	Pancreas	Pancrea
23	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:143859400-143876000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:143859600-143860400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:143859600-143861400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:143859600-143862600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:143859600-143866200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:143859600-143868600	Weak transcription	Primary B cells from cord blood	blood
31	chr6:143859800-143860400	Active TSS	Primary T cells fromperipheralblood	blood
32	chr6:143859800-143860600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:143859800-143860800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr6:143859800-143861000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:143859800-143861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:143859800-143861400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:143859800-143861600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:143859800-143863200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:143859800-143864600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr6:143859800-143864600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr6:143859800-143864800	Weak transcription	Colonic Mucosa	Colon
42	chr6:143860000-143860400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:143860000-143860400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:143860000-143860600	Enhancers	Fetal Intestine Small	intestine
45	chr6:143860000-143860800	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr6:143860000-143860800	Enhancers	Duodenum Mucosa	Duodenum
47	chr6:143860000-143860800	Flanking Active TSS	GM12878-XiMat	blood
48	chr6:143860000-143862400	Enhancers	Fetal Intestine Large	intestine
49	chr6:143860000-143862800	Weak transcription	Small Intestine	intestine
50	chr6:143860000-143865000	Weak transcription	Rectal Mucosa Donor 29	rectum

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