Variant report

Variant	rs9496668
Chromosome Location	chr6:143882816-143882817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143882307..143884065-chr6:144383379..144386197,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUCA2-1	chr6:143882606-143883187	NONHSAT115358
2	lnc-FUCA2-1	chr6:143882304-143883171	NONHSAT115359
3	lnc-FUCA2-1	chr6:143882304-143883188	NR_027114

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

rs_ID	r²[population]
rs9321905	1.00[AMR][1000 genomes]
rs9484757	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484758	0.81[AFR][1000 genomes]
rs9484761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484763	0.91[AFR][1000 genomes]
rs9496657	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496658	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496710	1.00[AMR][1000 genomes]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143868200-143883600	Weak transcription	Gastric	stomach
3	chr6:143875200-143888200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:143876200-143884800	Weak transcription	Fetal Stomach	stomach
5	chr6:143877000-143883600	Weak transcription	Stomach Mucosa	stomach
6	chr6:143877600-143883000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:143878600-143890200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:143878800-143887000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
11	chr6:143879200-143887800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
13	chr6:143880600-143889600	Weak transcription	NHDF-Ad	bronchial
14	chr6:143880800-143885800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:143881000-143885000	Strong transcription	Fetal Intestine Small	intestine
16	chr6:143881600-143883200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:143881600-143883400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:143881800-143883400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr6:143881800-143883600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:143881800-143883600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:143882200-143883000	Enhancers	Right Ventricle	heart
22	chr6:143882200-143887000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:143882400-143883000	Enhancers	Fetal Heart	heart
24	chr6:143882400-143887000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:143882600-143883000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr6:143882600-143883000	Enhancers	Left Ventricle	heart
27	chr6:143882800-143883800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:143882800-143886600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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