Variant report

Variant	rs1338767
Chromosome Location	chr1:220607891-220607892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10735498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11804188	1.00[EUR][1000 genomes]
rs12748694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1338766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1361254	1.00[EUR][1000 genomes]
rs1361255	1.00[EUR][1000 genomes]
rs1416327	0.95[AFR][1000 genomes]
rs1572686	0.81[AFR][1000 genomes]
rs1856434	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1933879	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2153130	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2185156	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2378387	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4011895	0.85[AMR][1000 genomes]
rs4846324	0.81[YRI][hapmap];0.85[AMR][1000 genomes]
rs7525770	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1009136	chr1:220607563-220613446	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220605400-220609200	Weak transcription	Fetal Heart	heart
2	chr1:220606800-220614200	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:220607800-220608200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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