Variant report

Variant	rs2378387
Chromosome Location	chr1:220622906-220622907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10735498	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12748694	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1338766	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1338767	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1338774	1.00[EUR][1000 genomes]
rs1338776	1.00[EUR][1000 genomes]
rs1416327	0.90[AFR][1000 genomes]
rs1572686	0.93[AFR][1000 genomes]
rs1856434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1933878	1.00[EUR][1000 genomes]
rs1933879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2153130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2185156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4011895	0.80[AFR][1000 genomes]
rs7537327	1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220610000-220624000	Weak transcription	Fetal Heart	heart
2	chr1:220620400-220624400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:220620600-220626800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:220621200-220624600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:220622200-220624600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:220622200-220624800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:220622400-220623000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:220622600-220623000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:220622800-220623000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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