Variant report

Variant	rs13389341
Chromosome Location	chr2:187337560-187337561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10164423	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170460	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178380	1.00[ASN][1000 genomes]
rs10190643	1.00[ASN][1000 genomes]
rs10201678	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206285	1.00[ASN][1000 genomes]
rs10208364	1.00[ASN][1000 genomes]
rs13383146	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384032	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390957	1.00[ASN][1000 genomes]
rs13396881	0.84[EUR][1000 genomes]
rs13398794	1.00[ASN][1000 genomes]
rs13400819	1.00[ASN][1000 genomes]
rs13411835	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413555	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414293	1.00[ASN][1000 genomes]
rs13418456	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424471	1.00[ASN][1000 genomes]
rs16827842	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103051	1.00[ASN][1000 genomes]
rs62197196	1.00[ASN][1000 genomes]
rs62197200	1.00[ASN][1000 genomes]
rs62197201	1.00[ASN][1000 genomes]
rs62197202	1.00[ASN][1000 genomes]
rs62197203	1.00[ASN][1000 genomes]
rs62197214	1.00[ASN][1000 genomes]
rs62197216	1.00[ASN][1000 genomes]
rs62197217	1.00[ASN][1000 genomes]
rs62197218	1.00[ASN][1000 genomes]
rs62197222	1.00[ASN][1000 genomes]
rs62197223	1.00[ASN][1000 genomes]
rs62197226	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197227	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197253	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197255	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197257	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198560	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198604	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198605	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198606	0.80[EUR][1000 genomes]
rs62198607	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198611	1.00[ASN][1000 genomes]
rs62198612	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198652	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198656	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198658	0.84[EUR][1000 genomes]
rs62198659	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199460	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199522	1.00[ASN][1000 genomes]
rs62199523	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199524	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199527	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62200577	1.00[ASN][1000 genomes]
rs62200580	1.00[ASN][1000 genomes]
rs62200581	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62200583	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62200584	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979177	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979185	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187320600-187347400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:187322600-187345400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:187328000-187350400	Weak transcription	Pancreas	Pancrea
4	chr2:187336000-187339600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:187337000-187347000	Weak transcription	HepG2	liver
6	chr2:187337000-187348000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:187337200-187339200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:187337200-187339600	Weak transcription	Fetal Intestine Small	intestine

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