Variant report

Variant	rs1338972
Chromosome Location	chr6:118271769-118271770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1338973	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1416414	1.00[AFR][1000 genomes]
rs2225960	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2355795	0.90[AFR][1000 genomes]
rs2760228	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2760230	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2763008	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2789011	1.00[AFR][1000 genomes]
rs2789012	1.00[YRI][hapmap]
rs4113074	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4245489	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4245491	1.00[YRI][hapmap]
rs4946310	1.00[AFR][1000 genomes]
rs6908566	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6934820	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6942098	1.00[AFR][1000 genomes]
rs7753286	1.00[YRI][hapmap]
rs7768494	0.90[AFR][1000 genomes]
rs9372490	0.90[AFR][1000 genomes]
rs9372491	0.90[AFR][1000 genomes]
rs9387523	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9387534	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118260800-118272400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:118261400-118272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:118267200-118272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:118267200-118273000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:118268800-118272400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:118269000-118272000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:118271000-118272800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:118271200-118274200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:118271600-118271800	Enhancers	Brain Germinal Matrix	brain
11	chr6:118271600-118272000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:118271600-118274000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:118271600-118274400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links