Variant report

Variant	rs9387534
Chromosome Location	chr6:118328850-118328851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1338972	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1338973	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1416414	0.90[AFR][1000 genomes]
rs2225960	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2355795	1.00[AFR][1000 genomes]
rs2760228	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2760230	1.00[YRI][hapmap]
rs2763008	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2789011	0.90[AFR][1000 genomes]
rs2789012	1.00[YRI][hapmap]
rs4113074	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4245489	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4245491	1.00[YRI][hapmap]
rs4946310	0.90[AFR][1000 genomes]
rs6908566	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6934820	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6942098	0.90[AFR][1000 genomes]
rs7753286	1.00[YRI][hapmap]
rs7768494	1.00[AFR][1000 genomes]
rs9372490	1.00[AFR][1000 genomes]
rs9372491	1.00[AFR][1000 genomes]
rs9387523	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118323400-118332800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118324600-118332000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118324800-118332600	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links