Variant report

Variant	rs2760230
Chromosome Location	chr6:118253301-118253302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13200447	0.87[EUR][1000 genomes]
rs1338972	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1338973	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1416414	0.83[AFR][1000 genomes]
rs17334264	0.87[EUR][1000 genomes]
rs2225960	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2476202	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2760227	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760228	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2760236	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2760237	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2760238	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2760248	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2763008	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2788994	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2788995	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2788997	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2788998	0.87[EUR][1000 genomes]
rs2789011	0.83[AFR][1000 genomes]
rs2789012	1.00[YRI][hapmap]
rs34965495	0.83[EUR][1000 genomes]
rs35106048	0.87[EUR][1000 genomes]
rs4113074	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4245489	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4245491	1.00[YRI][hapmap]
rs4946310	0.83[AFR][1000 genomes]
rs553592	0.87[EUR][1000 genomes]
rs555789	0.87[EUR][1000 genomes]
rs6905222	0.87[EUR][1000 genomes]
rs6908566	1.00[YRI][hapmap]
rs6934820	1.00[YRI][hapmap]
rs6942098	0.83[AFR][1000 genomes]
rs6942237	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71570870	0.87[EUR][1000 genomes]
rs7753286	1.00[YRI][hapmap]
rs7765524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9387523	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9387534	1.00[YRI][hapmap]
rs9654611	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118252000-118254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:118252000-118254800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:118252200-118254400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:118252200-118255000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:118252400-118254400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:118253000-118254000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:118253000-118254200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:118253000-118254800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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