Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13200447	0.84[EUR][1000 genomes]
rs17334264	0.84[EUR][1000 genomes]
rs2476202	0.92[EUR][1000 genomes]
rs2760227	0.88[EUR][1000 genomes]
rs2760230	0.87[EUR][1000 genomes]
rs2760236	0.92[EUR][1000 genomes]
rs2760237	0.92[EUR][1000 genomes]
rs2760238	0.92[EUR][1000 genomes]
rs2760248	0.88[EUR][1000 genomes]
rs2788994	0.88[EUR][1000 genomes]
rs2788995	1.00[EUR][1000 genomes]
rs2788997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35106048	0.84[EUR][1000 genomes]
rs553592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555789	1.00[EUR][1000 genomes]
rs6905222	0.84[EUR][1000 genomes]
rs6942237	0.91[EUR][1000 genomes]
rs71570870	0.84[EUR][1000 genomes]
rs7745854	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765524	0.87[EUR][1000 genomes]
rs9654611	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3397341	chr6:118223059-118225507	Enhancers Weak transcription Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118223800-118226600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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