Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118253905..118256395-chr6:118256942..118259644,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13200447	0.80[EUR][1000 genomes]
rs17334264	0.80[EUR][1000 genomes]
rs2476202	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2760227	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2760230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2760236	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2760237	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2760238	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2788994	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2788995	0.88[EUR][1000 genomes]
rs2788997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs2788998	0.88[EUR][1000 genomes]
rs35106048	0.80[EUR][1000 genomes]
rs553592	0.88[EUR][1000 genomes]
rs555789	0.88[EUR][1000 genomes]
rs6905222	0.80[EUR][1000 genomes]
rs6942237	0.88[EUR][1000 genomes]
rs71570870	0.80[EUR][1000 genomes]
rs7765524	0.92[EUR][1000 genomes]
rs9654611	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118254000-118259800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:118255000-118259600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:118255400-118259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:118255400-118259000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:118255400-118259400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:118255400-118259800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118255600-118259600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:118255600-118259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:118256400-118259600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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