The 2.0 version of rSNPBase

Variant report

Variant rs13393686
Chromosome Location chr2:39960794-39960795
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:39942000-39963000 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr2:39944400-39976600 Weak transcription Fetal Brain Male brain
3 chr2:39948200-39961200 Weak transcription H1 Cell Line embryonic stem cell
4 chr2:39951000-39963600 Weak transcription Pancreas Pancrea
5 chr2:39951000-39964800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr2:39951200-39964800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr2:39951400-39961400 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr2:39951400-39961800 Weak transcription Colon Smooth Muscle Colon
9 chr2:39951400-39962000 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr2:39951400-39963800 Weak transcription H9 Cell Line embryonic stem cell
11 chr2:39952000-39964800 Weak transcription Rectal Smooth Muscle rectum
12 chr2:39952400-39962400 Weak transcription Spleen Spleen
13 chr2:39952600-39962600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr2:39952800-39962400 Weak transcription Fetal Kidney kidney
15 chr2:39952800-39962600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr2:39953200-39962400 Weak transcription Muscle Satellite Cultured Cells --
17 chr2:39956000-39962800 Weak transcription HUVEC blood vessel
18 chr2:39956200-39962200 Weak transcription Adipose Nuclei Adipose
19 chr2:39956200-39966400 Weak transcription Small Intestine intestine
20 chr2:39956400-39962600 Weak transcription Placenta Placenta
21 chr2:39956600-39962000 Weak transcription Primary B cells from peripheral blood blood
22 chr2:39956600-39962000 Weak transcription NH-A brain
23 chr2:39956600-39962800 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr2:39956600-39963400 Weak transcription Ovary ovary
25 chr2:39956800-39964600 Weak transcription Placenta Amnion Placenta Amnion
26 chr2:39957200-39960800 Genic enhancers HSMMtube muscle
27 chr2:39957400-39971200 Strong transcription Primary T cells from cord blood blood
28 chr2:39957600-39960800 Strong transcription Fetal Adrenal Gland Adrenal Gland
29 chr2:39957600-39960800 Strong transcription Fetal Stomach stomach
30 chr2:39957600-39963200 Strong transcription Fetal Lung lung
31 chr2:39957600-39964200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr2:39957800-39962400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr2:39958000-39961200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
34 chr2:39958400-39963800 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr2:39958600-39962600 Weak transcription Hela-S3 cervix
36 chr2:39958800-39960800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr2:39958800-39962000 Weak transcription Primary T cells fromperipheralblood blood
38 chr2:39958800-39962600 Weak transcription Primary T helper cells PMA-I stimulated --
39 chr2:39958800-39962600 Genic enhancers Osteobl bone
40 chr2:39958800-39964400 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr2:39958800-39964600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr2:39959000-39960800 Strong transcription Fetal Intestine Small intestine
43 chr2:39959000-39960800 Strong transcription NHEK skin
44 chr2:39959000-39961200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr2:39959000-39961600 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr2:39959000-39971200 Strong transcription Fetal Thymus thymus
47 chr2:39959200-39961400 Genic enhancers HSMM muscle
48 chr2:39959200-39961600 Enhancers Skeletal Muscle Male skeletal muscle
49 chr2:39959200-39961800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr2:39959400-39960800 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015