The 2.0 version of rSNPBase

Variant report

Variant rs2716728
Chromosome Location chr2:39953889-39953890
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:39925000-39957600 Weak transcription Fetal Stomach stomach
2 chr2:39931400-39957600 Weak transcription Fetal Muscle Leg muscle
3 chr2:39938000-39957600 Weak transcription Fetal Brain Female brain
4 chr2:39942000-39963000 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr2:39943200-39956200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr2:39944400-39976600 Weak transcription Fetal Brain Male brain
7 chr2:39945200-39954400 Enhancers Breast Myoepithelial Primary Cells Breast
8 chr2:39946800-39959600 Weak transcription Brain Germinal Matrix brain
9 chr2:39947800-39959800 Weak transcription Brain Cingulate Gyrus brain
10 chr2:39948200-39961200 Weak transcription H1 Cell Line embryonic stem cell
11 chr2:39948800-39959600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr2:39949000-39960400 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr2:39950000-39954400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr2:39951000-39956000 Weak transcription Placenta Amnion Placenta Amnion
15 chr2:39951000-39957400 Weak transcription Fetal Muscle Trunk muscle
16 chr2:39951000-39959400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr2:39951000-39963600 Weak transcription Pancreas Pancrea
18 chr2:39951000-39964800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr2:39951200-39957600 Weak transcription Fetal Lung lung
20 chr2:39951200-39964800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr2:39951400-39957800 Weak transcription Stomach Smooth Muscle stomach
22 chr2:39951400-39958800 Weak transcription Aorta Aorta
23 chr2:39951400-39960200 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr2:39951400-39961400 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr2:39951400-39961800 Weak transcription Colon Smooth Muscle Colon
26 chr2:39951400-39962000 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr2:39951400-39963800 Weak transcription H9 Cell Line embryonic stem cell
28 chr2:39952000-39956200 Weak transcription Psoas Muscle Psoas
29 chr2:39952000-39964800 Weak transcription Rectal Smooth Muscle rectum
30 chr2:39952200-39957400 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr2:39952200-39960200 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr2:39952400-39955400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr2:39952400-39957400 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr2:39952400-39958800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr2:39952400-39962400 Weak transcription Spleen Spleen
36 chr2:39952600-39962600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr2:39952800-39954400 Enhancers Fetal Heart heart
38 chr2:39952800-39955400 Weak transcription HSMM muscle
39 chr2:39952800-39957600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr2:39952800-39960200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr2:39952800-39962400 Weak transcription Fetal Kidney kidney
42 chr2:39952800-39962600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr2:39953000-39954400 Enhancers HepG2 liver
44 chr2:39953000-39957800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr2:39953000-39959400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr2:39953200-39957800 Weak transcription Osteobl bone
47 chr2:39953200-39958800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr2:39953200-39962400 Weak transcription Muscle Satellite Cultured Cells --
49 chr2:39953400-39954000 Enhancers Left Ventricle heart
50 chr2:39953400-39955600 Weak transcription NH-A brain

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Last update: Aug 31, 2015