Variant report

Variant	rs13394672
Chromosome Location	chr2:64287184-64287185
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10170601	1.00[AMR][1000 genomes]
rs10175439	1.00[AMR][1000 genomes]
rs10178275	1.00[AMR][1000 genomes]
rs10179276	1.00[AMR][1000 genomes]
rs10181595	1.00[AMR][1000 genomes]
rs10194235	1.00[AMR][1000 genomes]
rs10197962	1.00[AMR][1000 genomes]
rs13384491	1.00[AMR][1000 genomes]
rs13386653	1.00[AMR][1000 genomes]
rs13387854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391343	1.00[AMR][1000 genomes]
rs13396651	1.00[AMR][1000 genomes]
rs13402981	1.00[AMR][1000 genomes]
rs13403474	1.00[AMR][1000 genomes]
rs13405024	1.00[AMR][1000 genomes]
rs13411468	1.00[AMR][1000 genomes]
rs13415878	1.00[AMR][1000 genomes]
rs13416589	1.00[AMR][1000 genomes]
rs13418689	1.00[AMR][1000 genomes]
rs13422518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13423144	1.00[AMR][1000 genomes]
rs13425328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13425693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13427671	1.00[AMR][1000 genomes]
rs13427994	1.00[AMR][1000 genomes]
rs13428769	1.00[AMR][1000 genomes]
rs13429652	1.00[AMR][1000 genomes]
rs13431823	1.00[AMR][1000 genomes]
rs6742704	1.00[AMR][1000 genomes]
rs7579814	1.00[AMR][1000 genomes]
rs7587919	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1013132	chr2:64235175-64631084	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2757803	chr2:64253005-64539556	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv2759055	chr2:64253005-64539556	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv428396	chr2:64253005-64539556	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64277400-64291200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:64280000-64290600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:64281600-64290800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:64281600-64291200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:64282000-64290200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:64282000-64290600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:64282400-64289200	Weak transcription	GM12878-XiMat	blood
8	chr2:64282800-64290200	Weak transcription	Thymus	Thymus
9	chr2:64284000-64290400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:64284200-64289600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:64284400-64289600	Weak transcription	NHEK	skin
12	chr2:64285600-64287200	Enhancers	Placenta	Placenta
13	chr2:64285600-64290800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:64285800-64290000	Weak transcription	Fetal Thymus	thymus
15	chr2:64285800-64290800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:64285800-64290800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:64285800-64291000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:64287000-64289400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links