Variant report

Variant	rs13398414
Chromosome Location	chr2:190376571-190376572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10165458	1.00[AMR][1000 genomes]
rs10169961	1.00[AMR][1000 genomes]
rs10207870	1.00[AMR][1000 genomes]
rs13398464	1.00[AMR][1000 genomes]
rs13401036	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13403213	1.00[AMR][1000 genomes]
rs13417284	0.83[AFR][1000 genomes]
rs13419394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424504	1.00[AMR][1000 genomes]
rs16823958	0.90[AFR][1000 genomes]
rs28475172	1.00[AMR][1000 genomes]
rs6757248	1.00[AMR][1000 genomes]
rs6760660	1.00[AMR][1000 genomes]
rs73045800	1.00[AMR][1000 genomes]
rs73047715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv3439566	chr2:190364328-190376661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190366000-190377600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:190367000-190378400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:190371400-190378600	Weak transcription	Psoas Muscle	Psoas
4	chr2:190371600-190378000	Weak transcription	Ovary	ovary
5	chr2:190375200-190376600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:190375600-190376800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:190375600-190380600	Weak transcription	Stomach Mucosa	stomach
8	chr2:190375800-190376600	Enhancers	Liver	Liver
9	chr2:190376000-190386000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:190376200-190376600	Enhancers	Adipose Nuclei	Adipose
11	chr2:190376200-190377000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:190376400-190376600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:190376400-190378400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr2:190376400-190382000	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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