Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10165458	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10169961	1.00[AMR][1000 genomes]
rs10174921	1.00[YRI][hapmap]
rs10200629	1.00[YRI][hapmap]
rs10202436	1.00[YRI][hapmap]
rs10202723	1.00[YRI][hapmap]
rs10205215	1.00[YRI][hapmap]
rs10207870	1.00[AMR][1000 genomes]
rs13398414	1.00[AMR][1000 genomes]
rs13398464	1.00[AMR][1000 genomes]
rs13401036	1.00[AMR][1000 genomes]
rs13403213	1.00[AMR][1000 genomes]
rs13407452	1.00[YRI][hapmap]
rs13411962	1.00[AMR][1000 genomes]
rs13419394	1.00[AMR][1000 genomes]
rs13424504	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13429628	1.00[YRI][hapmap]
rs28475172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6721230	1.00[YRI][hapmap]
rs6757248	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045800	1.00[AMR][1000 genomes]
rs73047715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv584062	chr2:190272195-190376493	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190335000-190366200	Weak transcription	Ovary	ovary
2	chr2:190349200-190365000	Weak transcription	Fetal Intestine Large	intestine
3	chr2:190353000-190364600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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