Variant report

Variant	rs13419394
Chromosome Location	chr2:190374593-190374594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10165458	1.00[AMR][1000 genomes]
rs10169961	1.00[AMR][1000 genomes]
rs10207870	1.00[AMR][1000 genomes]
rs13398414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13398464	1.00[AMR][1000 genomes]
rs13401036	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13403213	1.00[AMR][1000 genomes]
rs13417284	0.83[AFR][1000 genomes]
rs13424504	1.00[AMR][1000 genomes]
rs16823958	0.90[AFR][1000 genomes]
rs28475172	1.00[AMR][1000 genomes]
rs6757248	1.00[AMR][1000 genomes]
rs6760660	1.00[AMR][1000 genomes]
rs73045800	1.00[AMR][1000 genomes]
rs73047715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv584062	chr2:190272195-190376493	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv3439566	chr2:190364328-190376661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190366000-190377600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:190367000-190378400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:190371400-190378600	Weak transcription	Psoas Muscle	Psoas
4	chr2:190371600-190378000	Weak transcription	Ovary	ovary
5	chr2:190372000-190374800	Weak transcription	HepG2	liver
6	chr2:190372000-190376400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:190372800-190376000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:190374000-190375800	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr2:190374400-190374600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:190374400-190375000	Enhancers	Fetal Intestine Large	intestine
11	chr2:190374400-190375600	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links