The 2.0 version of rSNPBase

Variant report

Variant rs13398554
Chromosome Location chr2:54185028-54185029
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54087600-54187600 Weak transcription Stomach Mucosa stomach
2 chr2:54151000-54189800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr2:54153400-54194600 Weak transcription Fetal Brain Male brain
4 chr2:54156600-54188000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr2:54156600-54190000 Weak transcription Spleen Spleen
6 chr2:54159200-54188000 Weak transcription Colonic Mucosa Colon
7 chr2:54159200-54188000 Weak transcription Esophagus oesophagus
8 chr2:54159200-54188200 Weak transcription Small Intestine intestine
9 chr2:54159200-54189400 Weak transcription Aorta Aorta
10 chr2:54159200-54189800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr2:54159400-54195800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr2:54161600-54189800 Weak transcription Ovary ovary
13 chr2:54171000-54188600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr2:54173400-54191400 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr2:54174200-54195600 Weak transcription Thymus Thymus
16 chr2:54174400-54188000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr2:54174400-54188600 Weak transcription GM12878-XiMat blood
18 chr2:54175200-54193000 Weak transcription Fetal Intestine Small intestine
19 chr2:54175200-54195400 Weak transcription Fetal Stomach stomach
20 chr2:54175400-54188400 Weak transcription Stomach Smooth Muscle stomach
21 chr2:54175800-54189800 Weak transcription H9 Cell Line embryonic stem cell
22 chr2:54175800-54190000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr2:54176000-54187800 Weak transcription Fetal Muscle Leg muscle
24 chr2:54176000-54189800 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr2:54176200-54188400 Weak transcription Primary hematopoietic stem cells blood
26 chr2:54176200-54188400 Weak transcription HMEC breast
27 chr2:54176200-54188600 Weak transcription Primary monocytes fromperipheralblood blood
28 chr2:54176200-54189800 Weak transcription Fetal Muscle Trunk muscle
29 chr2:54176200-54189800 Weak transcription NH-A brain
30 chr2:54176200-54191600 Weak transcription NHDF-Ad bronchial
31 chr2:54176200-54192000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr2:54176200-54194200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr2:54176200-54194600 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr2:54176200-54195400 Weak transcription Fetal Intestine Large intestine
35 chr2:54176200-54195400 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr2:54176200-54196000 Weak transcription Fetal Thymus thymus
37 chr2:54176200-54196200 Weak transcription Placenta Placenta
38 chr2:54176400-54187800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr2:54176400-54188200 Weak transcription Primary T cells from cord blood blood
40 chr2:54176400-54188400 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr2:54176400-54189000 Weak transcription Fetal Kidney kidney
42 chr2:54176400-54194800 Weak transcription NHLF lung
43 chr2:54176400-54195000 Weak transcription HSMM muscle
44 chr2:54176600-54188600 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr2:54176600-54189200 Weak transcription Adipose Nuclei Adipose
46 chr2:54176800-54188400 Weak transcription NHEK skin
47 chr2:54176800-54192200 Weak transcription Hela-S3 cervix
48 chr2:54177000-54188000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr2:54177000-54189800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr2:54177000-54189800 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015