Variant report

Variant	rs13400872
Chromosome Location	chr2:231461784-231461785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10169664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10194745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10205403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10206019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10933348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12165161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13383722	0.91[AMR][1000 genomes]
rs13401171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13423464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391644	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56936934	0.83[AMR][1000 genomes]
rs57487135	0.83[AMR][1000 genomes]
rs58644355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60864433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6745953	1.00[AMR][1000 genomes]
rs6746215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6746391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6761068	1.00[AMR][1000 genomes]
rs73992469	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231457000-231465800	Weak transcription	Thymus	Thymus
2	chr2:231457600-231462000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr2:231457800-231463000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:231457800-231464600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:231458000-231463000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:231459200-231462400	Enhancers	GM12878-XiMat	blood
7	chr2:231459200-231465200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:231459400-231464200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr2:231459400-231464400	Weak transcription	Primary T cells from cord blood	blood
10	chr2:231459400-231464400	Weak transcription	Dnd41	blood
11	chr2:231459600-231462600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:231459600-231465200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:231459800-231462600	Weak transcription	Primary B cells from cord blood	blood
14	chr2:231459800-231464600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr2:231460000-231464400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:231461400-231462400	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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