Variant report

Variant	rs58644355
Chromosome Location	chr2:231470566-231470567
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10169664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10194745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10205403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10206019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10933348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12165161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13383722	0.91[AMR][1000 genomes]
rs13400872	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13423464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56936934	0.83[AMR][1000 genomes]
rs57487135	0.83[AMR][1000 genomes]
rs60864433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6745953	1.00[AMR][1000 genomes]
rs6746215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6746391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6761068	1.00[AMR][1000 genomes]
rs73992469	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231468800-231475000	Weak transcription	Primary B cells from cord blood	blood
2	chr2:231469400-231472000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
3	chr2:231469600-231474800	Weak transcription	GM12878-XiMat	blood
4	chr2:231469600-231475000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:231469600-231475000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:231469600-231475200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr2:231470200-231475800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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