Variant report

Variant	rs13415639
Chromosome Location	chr2:231465893-231465894
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10169664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10194745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10205403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10206019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10933348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12165161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13383722	0.91[AMR][1000 genomes]
rs13400872	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13423464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56936934	0.83[AMR][1000 genomes]
rs57487135	0.83[AMR][1000 genomes]
rs58644355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60864433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6745953	1.00[AMR][1000 genomes]
rs6746215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6746391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6761068	1.00[AMR][1000 genomes]
rs73992469	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231462400-231469400	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:231462600-231468800	Enhancers	Primary B cells from cord blood	blood
3	chr2:231463000-231467200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:231464200-231467600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr2:231464400-231467000	Enhancers	Dnd41	blood
6	chr2:231464400-231467200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr2:231464400-231467600	Enhancers	Primary T cells from cord blood	blood
8	chr2:231464400-231467600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr2:231464600-231467600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr2:231464600-231467600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:231464600-231467600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr2:231464600-231467600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr2:231465000-231467600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:231465200-231466800	Flanking Active TSS	GM12878-XiMat	blood
15	chr2:231465200-231469200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:231465200-231469600	Enhancers	Fetal Thymus	thymus
17	chr2:231465400-231467600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr2:231465400-231467600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr2:231465600-231466000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:231465600-231466000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr2:231465600-231466000	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr2:231465600-231466000	Bivalent Enhancer	HepG2	liver
23	chr2:231465600-231466200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:231465600-231467600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:231465800-231467600	Enhancers	Thymus	Thymus

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