Variant report

Variant	rs13401442
Chromosome Location	chr2:144461481-144461482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144460606..144463263-chr2:144463316..144467877,5	K562	blood:

Variant related genes	Relation type
ENSG00000075884	Chromatin interaction

rs_ID	r²[population]
rs10164558	1.00[AMR][1000 genomes]
rs10164854	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10165124	1.00[ASW][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10198154	1.00[AMR][1000 genomes]
rs13393509	1.00[AMR][1000 genomes]
rs13403034	1.00[AMR][1000 genomes]
rs13431916	1.00[AMR][1000 genomes]
rs13431958	1.00[AMR][1000 genomes]
rs13432842	1.00[AMR][1000 genomes]
rs13432899	1.00[AMR][1000 genomes]
rs16822965	0.81[LWK][hapmap];1.00[AMR][1000 genomes]
rs9287355	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144450600-144464200	Weak transcription	Fetal Brain Male	brain
2	chr2:144455800-144487000	Weak transcription	Spleen	Spleen
3	chr2:144457000-144471600	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr2:144457200-144465200	Strong transcription	Primary T cells from cord blood	blood
5	chr2:144457400-144467800	Weak transcription	Aorta	Aorta
6	chr2:144457600-144461800	Weak transcription	Fetal Lung	lung
7	chr2:144457600-144466600	Strong transcription	Primary B cells from cord blood	blood
8	chr2:144458000-144466000	Weak transcription	Ovary	ovary
9	chr2:144458200-144461800	Weak transcription	Stomach Mucosa	stomach
10	chr2:144458400-144471000	Strong transcription	Dnd41	blood
11	chr2:144458600-144464800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:144459000-144462200	Strong transcription	Thymus	Thymus
13	chr2:144459000-144464800	Enhancers	Fetal Intestine Small	intestine
14	chr2:144459000-144466600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr2:144459000-144467400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:144459200-144462400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:144459200-144462400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr2:144459200-144469600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:144459400-144462800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:144459400-144463000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:144459400-144470800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr2:144459600-144463600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr2:144459600-144464800	Enhancers	Fetal Intestine Large	intestine
24	chr2:144460000-144462400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr2:144460000-144467400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:144460200-144462600	Enhancers	K562	blood
27	chr2:144460200-144465000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:144460200-144465200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:144460200-144466200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr2:144460200-144466200	Strong transcription	Fetal Thymus	thymus
31	chr2:144460200-144467400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:144460200-144468000	Strong transcription	Primary B cells from peripheral blood	blood
33	chr2:144460600-144461600	Strong transcription	GM12878-XiMat	blood
34	chr2:144460600-144467000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr2:144460800-144462400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr2:144460800-144467400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr2:144460800-144468600	Strong transcription	Primary hematopoietic stem cells	blood
38	chr2:144461000-144462600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr2:144461000-144463400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr2:144461000-144463800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr2:144461000-144464400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr2:144461200-144465600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:144461400-144462800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr2:144461400-144463400	Enhancers	Fetal Heart	heart

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