Variant report

Variant	rs16822965
Chromosome Location	chr2:144490226-144490227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10164558	1.00[AMR][1000 genomes]
rs10164854	1.00[AMR][1000 genomes]
rs10165124	0.83[MKK][hapmap];1.00[AMR][1000 genomes]
rs10198154	1.00[AMR][1000 genomes]
rs13393509	1.00[AMR][1000 genomes]
rs13401442	0.81[LWK][hapmap];1.00[AMR][1000 genomes]
rs13403034	1.00[AMR][1000 genomes]
rs13431916	1.00[AMR][1000 genomes]
rs13431958	1.00[AMR][1000 genomes]
rs13432842	1.00[AMR][1000 genomes]
rs13432899	0.93[MKK][hapmap];1.00[AMR][1000 genomes]
rs9287355	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459707	chr2:144488368-144517069	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv583245	chr2:144488368-144517069	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144470200-144523200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr2:144470200-144525400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:144477200-144525200	Weak transcription	Fetal Thymus	thymus
4	chr2:144477600-144494200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:144478000-144490600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:144478600-144499800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:144486200-144496200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:144486200-144523800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr2:144486400-144491600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr2:144486400-144499800	Weak transcription	Thymus	Thymus
11	chr2:144486400-144502800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:144486800-144496400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr2:144486800-144527600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr2:144487000-144492800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:144487000-144497200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:144487200-144497400	Weak transcription	Fetal Lung	lung
17	chr2:144487400-144490600	Weak transcription	Primary B cells from cord blood	blood
18	chr2:144487400-144491600	Weak transcription	Dnd41	blood
19	chr2:144488000-144499800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:144488200-144500200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:144488200-144525200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr2:144488400-144490600	Weak transcription	Primary T cells from cord blood	blood
23	chr2:144488400-144496200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr2:144488400-144499800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr2:144488400-144502600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr2:144488400-144508200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr2:144488800-144492000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr2:144488800-144493200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:144489200-144490600	Weak transcription	Brain Substantia Nigra	brain
30	chr2:144489200-144496400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr2:144489200-144501000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr2:144489800-144492800	Weak transcription	GM12878-XiMat	blood
33	chr2:144490000-144491600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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