Variant report

Variant	rs1340156
Chromosome Location	chr1:78744162-78744163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11807180	1.00[EUR][1000 genomes]
rs11807502	1.00[EUR][1000 genomes]
rs1538765	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17098321	1.00[EUR][1000 genomes]
rs17098354	1.00[EUR][1000 genomes]
rs17101286	1.00[EUR][1000 genomes]
rs17101443	1.00[EUR][1000 genomes]
rs17101553	1.00[EUR][1000 genomes]
rs17101560	1.00[EUR][1000 genomes]
rs17101563	1.00[EUR][1000 genomes]
rs17101578	1.00[EUR][1000 genomes]
rs17101728	1.00[EUR][1000 genomes]
rs17101736	1.00[EUR][1000 genomes]
rs17101744	1.00[EUR][1000 genomes]
rs532357	1.00[EUR][1000 genomes]
rs55717739	1.00[EUR][1000 genomes]
rs57065621	1.00[EUR][1000 genomes]
rs669733	1.00[MEX][hapmap]
rs7513372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9628620	1.00[EUR][1000 genomes]
rs9628623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv2763564	chr1:78727900-78747540	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2762158	chr1:78734241-78747540	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78734800-78749400	Weak transcription	Liver	Liver
2	chr1:78740000-78747000	Enhancers	Osteobl	bone
3	chr1:78740200-78745200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:78740400-78745600	Enhancers	NH-A	brain
5	chr1:78740400-78746800	Enhancers	HMEC	breast
6	chr1:78740400-78747000	Enhancers	NHDF-Ad	bronchial
7	chr1:78741000-78746800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:78741000-78747000	Enhancers	NHLF	lung
9	chr1:78741400-78746400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:78741800-78746400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:78742600-78744200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:78742600-78747000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:78742600-78747000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:78742600-78747600	Enhancers	Hela-S3	cervix
15	chr1:78742800-78744200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:78742800-78747800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:78743400-78746800	Enhancers	HSMM	muscle
18	chr1:78743600-78744600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:78743600-78746400	Enhancers	HSMMtube	muscle
20	chr1:78743600-78747000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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