Variant report

Variant	rs17098321
Chromosome Location	chr1:78595297-78595298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:78590091..78592317-chr1:78595079..78598058,2	K562	blood:
2	chr1:78594062..78596652-chr1:78598664..78601035,2	K562	blood:
3	chr1:78589424..78592317-chr1:78594735..78598058,3	K562	blood:
4	chr1:78593850..78595901-chr1:78596317..78598534,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1340156	1.00[EUR][1000 genomes]
rs17101286	1.00[EUR][1000 genomes]
rs17101412	0.85[AFR][1000 genomes]
rs17101443	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101479	0.85[AFR][1000 genomes]
rs17101491	0.85[AFR][1000 genomes]
rs17101553	1.00[EUR][1000 genomes]
rs17101560	1.00[EUR][1000 genomes]
rs17101563	1.00[EUR][1000 genomes]
rs17101578	1.00[EUR][1000 genomes]
rs4650379	0.92[AFR][1000 genomes]
rs4650453	0.85[AFR][1000 genomes]
rs4650514	0.82[AFR][1000 genomes]
rs55717739	1.00[EUR][1000 genomes]
rs74092316	1.00[EUR][1000 genomes]
rs74092323	1.00[EUR][1000 genomes]
rs74092325	1.00[EUR][1000 genomes]
rs74092336	1.00[EUR][1000 genomes]
rs74092337	1.00[EUR][1000 genomes]
rs74092338	1.00[EUR][1000 genomes]
rs74092342	1.00[EUR][1000 genomes]
rs74092352	1.00[EUR][1000 genomes]
rs74092353	1.00[EUR][1000 genomes]
rs7513372	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434340	chr1:78153780-78607103	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1837401	chr1:78595297-78597844	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78555400-78608600	Weak transcription	Pancreas	Pancrea
2	chr1:78567600-78607200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:78580200-78598000	Weak transcription	Aorta	Aorta
4	chr1:78580200-78608600	Weak transcription	HepG2	liver
5	chr1:78584200-78630600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:78584400-78597200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:78586400-78608600	Weak transcription	Colonic Mucosa	Colon
8	chr1:78587400-78607200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:78588200-78597600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:78594400-78598600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:78594600-78600000	Weak transcription	Fetal Intestine Small	intestine
12	chr1:78594600-78600400	Weak transcription	Fetal Intestine Large	intestine
13	chr1:78594600-78604600	Weak transcription	Liver	Liver

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