Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUBP1-4	chr1:78636165-78636921	NONHSAT004068

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11807180	1.00[EUR][1000 genomes]
rs11807502	1.00[EUR][1000 genomes]
rs1340156	1.00[EUR][1000 genomes]
rs1570443	0.89[AFR][1000 genomes]
rs1570444	0.89[AFR][1000 genomes]
rs17098321	0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101286	1.00[EUR][1000 genomes]
rs17101412	0.96[AFR][1000 genomes]
rs17101479	0.96[AFR][1000 genomes]
rs17101491	0.96[AFR][1000 genomes]
rs17101553	1.00[EUR][1000 genomes]
rs17101560	1.00[EUR][1000 genomes]
rs17101563	1.00[EUR][1000 genomes]
rs17101578	1.00[EUR][1000 genomes]
rs4650379	0.88[AFR][1000 genomes]
rs4650453	0.96[AFR][1000 genomes]
rs4650514	0.92[AFR][1000 genomes]
rs4650584	0.81[AFR][1000 genomes]
rs4650585	0.89[AFR][1000 genomes]
rs4650588	0.89[AFR][1000 genomes]
rs4650609	0.89[AFR][1000 genomes]
rs55717739	1.00[EUR][1000 genomes]
rs74092336	1.00[EUR][1000 genomes]
rs74092337	1.00[EUR][1000 genomes]
rs74092338	1.00[EUR][1000 genomes]
rs74092342	1.00[EUR][1000 genomes]
rs74092352	1.00[EUR][1000 genomes]
rs74092353	1.00[EUR][1000 genomes]
rs7513372	1.00[EUR][1000 genomes]
rs9628620	1.00[EUR][1000 genomes]
rs9628623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv1850497	chr1:78596312-78645701	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78625200-78636600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:78625200-78644400	Weak transcription	Pancreas	Pancrea
3	chr1:78631800-78636800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:78632000-78637200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:78634200-78636800	Weak transcription	Fetal Stomach	stomach
6	chr1:78634400-78637600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:78634600-78637000	Weak transcription	HSMM	muscle
8	chr1:78634600-78637200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:78634600-78637600	Weak transcription	NHDF-Ad	bronchial
10	chr1:78634800-78637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:78635000-78637200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:78635000-78646200	Weak transcription	Fetal Intestine Small	intestine
13	chr1:78636000-78637600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:78636200-78637000	Enhancers	Colon Smooth Muscle	Colon

Quick Search: