Variant report

Variant	rs13402327
Chromosome Location	chr2:125084293-125084294
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2565748	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7605310	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs779979	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs779980	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv874990	chr2:125038678-125099924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125083200-125084400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:125083400-125085400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr2:125083600-125084400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:125083600-125084400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:125083600-125085200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:125083800-125084800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:125083800-125085200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:125083800-125085400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:125084000-125085000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:125084000-125085200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:125084000-125085200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:125084200-125084600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links