Variant report

Variant	rs2565748
Chromosome Location	chr2:125086667-125086668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10165450	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11903880	0.90[CHB][hapmap]
rs13402327	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2553634	0.81[CHB][hapmap]
rs7605310	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs779979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs779980	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv874990	chr2:125038678-125099924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125084800-125088000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:125084800-125088000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:125085000-125087400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:125085200-125087200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr2:125085200-125088400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:125085400-125087000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:125085400-125088000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:125085600-125087600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:125085800-125087600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:125085800-125088200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr2:125085800-125093000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:125086400-125086800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr2:125086400-125087200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr2:125086400-125088200	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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