Variant report

Variant	rs779980
Chromosome Location	chr2:125078777-125078778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13402327	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2553628	0.95[EUR][1000 genomes]
rs2565748	0.92[ASN][1000 genomes]
rs7605310	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs779979	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv874990	chr2:125038678-125099924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125073000-125081000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:125076800-125078800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:125077800-125083600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:125078200-125080600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:125078400-125078800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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