Variant report

Variant	rs13403555
Chromosome Location	chr2:76499731-76499732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10164571	0.89[AFR][1000 genomes]
rs10176082	0.89[AFR][1000 genomes]
rs12477363	0.83[AFR][1000 genomes]
rs13390310	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs13410264	0.93[AFR][1000 genomes]
rs13432833	0.89[AFR][1000 genomes]
rs1526651	0.83[AFR][1000 genomes]
rs1526652	0.83[AFR][1000 genomes]
rs1526653	0.83[AFR][1000 genomes]
rs1980323	0.83[AFR][1000 genomes]
rs28572048	0.89[AFR][1000 genomes]
rs28626126	0.89[AFR][1000 genomes]
rs6738864	0.83[AFR][1000 genomes]
rs73940107	0.89[AFR][1000 genomes]
rs73940108	0.86[AFR][1000 genomes]
rs73940109	0.93[AFR][1000 genomes]
rs73940121	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874312	chr2:76430941-76500077	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76492400-76505200	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:76495400-76503600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:76496600-76503800	Enhancers	Hela-S3	cervix
4	chr2:76497600-76503800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links