Variant report

Variant	rs73940107
Chromosome Location	chr2:76485326-76485327
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10164571	0.93[AFR][1000 genomes]
rs10176082	1.00[AFR][1000 genomes]
rs12477363	0.87[AFR][1000 genomes]
rs13390310	0.93[AFR][1000 genomes]
rs13403555	0.89[AFR][1000 genomes]
rs13410264	0.96[AFR][1000 genomes]
rs13432833	1.00[AFR][1000 genomes]
rs1526651	0.87[AFR][1000 genomes]
rs1526652	0.87[AFR][1000 genomes]
rs1526653	0.87[AFR][1000 genomes]
rs1980323	0.87[AFR][1000 genomes]
rs28572048	1.00[AFR][1000 genomes]
rs28575581	0.86[AFR][1000 genomes]
rs28578605	0.90[AFR][1000 genomes]
rs28626126	1.00[AFR][1000 genomes]
rs6738864	0.87[AFR][1000 genomes]
rs73940108	0.96[AFR][1000 genomes]
rs73940109	0.96[AFR][1000 genomes]
rs73940121	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874311	chr2:76389455-76492999	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv874312	chr2:76430941-76500077	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76483600-76486200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:76484200-76491600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:76484600-76486000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:76484800-76485600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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